| IED ID | IndEnz0002012026 |
| Enzyme Type ID | protease012026 |
| Protein Name |
Ubiquitin carboxyl-terminal hydrolase 13 EC 3.4.19.12 Deubiquitinating enzyme 13 Ubiquitin thioesterase 13 Ubiquitin-specific-processing protease 13 |
| Gene Name | usp13 wu:fc61g08 |
| Organism | Danio rerio (Zebrafish) (Brachydanio rerio) |
| Taxonomic Lineage | cellular organisms Eukaryota Opisthokonta Metazoa Eumetazoa Bilateria Deuterostomia Chordata Craniata Vertebrata Gnathostomata (jawed vertebrates) Teleostomi Euteleostomi Actinopterygii Actinopteri Neopterygii Teleostei Osteoglossocephalai Clupeocephala Otomorpha Ostariophysi Otophysi Cypriniphysae Cypriniformes (carps and others) Cyprinoidei Danionidae Danioninae Danio Danio rerio (Zebrafish) (Brachydanio rerio) |
| Enzyme Sequence | MATDLGELLVPYMPTIRVPRTGDRVFKSECAFSYDSPESEGGLYVCMNSFLGFGREHVERHYRKTGQSVYMHLKRHVKEKATGAAGGAIPRRRNGKVFLDLELNRDFNGDDYEYEDEAKLVIFPDHYEIPLPNIEELPALVTIACDAVLNAPSPYKKQESDSWEEEIQVSRHARSLRQLDNGVRIPPSGWKCAKCEMRENLWLNLTDGSVLCGKWFFDGSGGNGHALEHYRESNFPLAVKLNTITPDGADIYSFDEEEAVLDPHISEHLLHFGIDMLQMQRTENGHHTDNHVQPRISDWEVIQEAGLKLKPVYGSGYTGIKNLGNSCYLSTTMQVLFSIPEFQRAYAGNLQRIFDYSPLDPTQDFNTQMAKLGHGLLSGQYSKPPMKSELIEQVMKEEHKQQQQRGISPKMFKALVSKGHPEFSSNRQQDAHEFLLHLINLVERNNSGSENPSDVFRFIVEERTQCCQSQKVRYTQRVDYLMQLPVPLEAASNREELIAYEGKRKEAEENMRPLPEVVRARVPFTACLQAFTEPENVPDFWSSALQAKSAGVKTSRFATFPEYMIVQLKKFTFGVDWVPKKLDMSVDVPDFLDLNRLRATGLQAGEEELPDLTPPIVIPEDTRDSSTNNSLESPEIDESSVMQLAEMGFPLEACRKAVYYTGNMGAEMAFNWIIAHMEEPDFAEPLAVPTYMESDLPSPSLPTTSALDNQPPEESISILTSMGFPRHHTIQALKASNNNLERALDWIFTHPDCEDESEAMSDTADTEPNDNSFSNANAHTDSSLSPDQDLSSPRVRDGPGRYELFAFISHMGTSTMSGHYVCHIKKEGRWLIYNDHKVCLSERPPKDLGYMYFYRRLSSC |
| Enzyme Length | 860 |
| Uniprot Accession Number | F1QFS9 |
| Absorption | |
| Active Site | ACT_SITE 327; /note=Nucleophile; /evidence=ECO:0000255|PROSITE-ProRule:PRU10093; ACT_SITE 819; /note=Proton acceptor; /evidence=ECO:0000255|PROSITE-ProRule:PRU10093 |
| Activity Regulation | ACTIVITY REGULATION: Specifically inhibited by spautin-1 (specific and potent autophagy inhibitor-1), a derivative of MBCQ that binds to usp13 and inhibits deubiquitinase activity. {ECO:0000250}. |
| Binding Site | |
| Calcium Binding | |
| catalytic Activity | CATALYTIC ACTIVITY: Reaction=Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).; EC=3.4.19.12; |
| DNA Binding | |
| EC Number | 3.4.19.12 |
| Enzyme Function | FUNCTION: Deubiquitinase that mediates deubiquitination of target proteins and is involved in various processes such as autophagy and endoplasmic reticulum-associated degradation (ERAD). {ECO:0000250|UniProtKB:Q92995}. |
| Temperature Dependency | |
| PH Dependency | |
| Pathway | |
| nucleotide Binding | |
| Features | Active site (2); Chain (1); Compositional bias (2); Domain (3); Metal binding (4); Region (2); Sequence conflict (1); Zinc finger (1) |
| Keywords | Autophagy;Hydrolase;Metal-binding;Protease;Reference proteome;Repeat;Thiol protease;Ubl conjugation pathway;Zinc;Zinc-finger |
| Interact With | |
| Induction | |
| Subcellular Location | |
| Modified Residue | |
| Post Translational Modification | |
| Signal Peptide | |
| Structure 3D | |
| Cross Reference PDB | - |
| Mapped Pubmed ID | 20040115; 25633252; |
| Motif | |
| Gene Encoded By | |
| Mass | 97,452 |
| Kinetics | |
| Metal Binding | METAL 192; /note=Zinc; /evidence=ECO:0000255|PROSITE-ProRule:PRU00502; METAL 195; /note=Zinc; /evidence=ECO:0000255|PROSITE-ProRule:PRU00502; METAL 212; /note=Zinc; /evidence=ECO:0000255|PROSITE-ProRule:PRU00502; METAL 225; /note=Zinc; /evidence=ECO:0000255|PROSITE-ProRule:PRU00502 |
| Rhea ID | |
| Cross Reference Brenda |