Detail Information for IndEnz0005000765
IED ID IndEnz0005000765
Enzyme Type ID lipase000765
Protein Name Platelet-activating factor acetylhydrolase 2, cytoplasmic
EC 3.1.1.47
PAF:lysophospholipid transacetylase
PAF:sphingosine transacetylase
Platelet-activating factor acetyltransferase PAFAH2
EC 2.3.1.149
Serine-dependent phospholipase A2
SD-PLA2
hSD-PLA2
Gene Name PAFAH2
Organism Homo sapiens (Human)
Taxonomic Lineage cellular organisms Eukaryota Opisthokonta Metazoa Eumetazoa Bilateria Deuterostomia Chordata Craniata Vertebrata Gnathostomata (jawed vertebrates) Teleostomi Euteleostomi Sarcopterygii Dipnotetrapodomorpha Tetrapoda Amniota Mammalia Theria Eutheria Boreoeutheria Euarchontoglires Primates Haplorrhini Simiiformes Catarrhini Hominoidea (apes) Hominidae (great apes) Homininae Homo Homo sapiens (Human)
Enzyme Sequence MGVNQSVGFPPVTGPHLVGCGDVMEGQNLQGSFFRLFYPCQKAEETMEQPLWIPRYEYCTGLAEYLQFNKRCGGLLFNLAVGSCRLPVSWNGPFKTKDSGYPLIIFSHGLGAFRTLYSAFCMELASRGFVVAVPEHRDRSAATTYFCKQAPEENQPTNESLQEEWIPFRRVEEGEKEFHVRNPQVHQRVSECLRVLKILQEVTAGQTVFNILPGGLDLMTLKGNIDMSRVAVMGHSFGGATAILALAKETQFRCAVALDAWMFPLERDFYPKARGPVFFINTEKFQTMESVNLMKKICAQHEQSRIITVLGSVHRSQTDFAFVTGNLIGKFFSTETRGSLDPYEGQEVMVRAMLAFLQKHLDLKEDYNQWNNLIEGIGPSLTPGAPHHLSSL
Enzyme Length 392
Uniprot Accession Number Q99487
Absorption
Active Site ACT_SITE 236; /note=Nucleophile; /evidence=ECO:0000250|UniProtKB:P79106; ACT_SITE 259; /note=Charge relay system; /evidence=ECO:0000255|PROSITE-ProRule:PRU10037; ACT_SITE 314; /note=Charge relay system; /evidence=ECO:0000255|PROSITE-ProRule:PRU10037
Activity Regulation ACTIVITY REGULATION: Inhibited by phenylmethanesulfonyl fluoride, 3,4,dichloroisocoumarin, diisopropyl fluorophosphate (DFP) and diethyl p-nitrophenyl phosphate (DENP). {ECO:0000269|PubMed:9494101}.
Binding Site
Calcium Binding
catalytic Activity CATALYTIC ACTIVITY: Reaction=a 1-O-alkyl-2-acetyl-sn-glycero-3-phosphocholine + H2O = 1-O-alkyl-sn-glycero-3-phosphocholine + acetate + H(+); Xref=Rhea:RHEA:17777, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30089, ChEBI:CHEBI:30909, ChEBI:CHEBI:36707; EC=3.1.1.47; Evidence={ECO:0000269|PubMed:9494101};PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:17778; Evidence={ECO:0000269|PubMed:9494101}; CATALYTIC ACTIVITY: Reaction=1-O-hexadecyl-2-acetyl-sn-glycero-3-phosphocholine + H2O = 1-O-hexadecyl-sn-glycero-3-phosphocholine + acetate + H(+); Xref=Rhea:RHEA:40479, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30089, ChEBI:CHEBI:44811, ChEBI:CHEBI:64496; Evidence={ECO:0000250|UniProtKB:P83006};PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:40480; Evidence={ECO:0000250|UniProtKB:P83006}; CATALYTIC ACTIVITY: Reaction=1-O-(1Z-alkenyl)-sn-glycero-3-phosphoethanolamine + 1-O-hexadecyl-2-acetyl-sn-glycero-3-phosphocholine = 1-O-(1Z-alkenyl)-2-acetyl-sn-glycero-3-phosphoethanolamine + 1-O-hexadecyl-sn-glycero-3-phosphocholine; Xref=Rhea:RHEA:41396, ChEBI:CHEBI:44811, ChEBI:CHEBI:64496, ChEBI:CHEBI:77288, ChEBI:CHEBI:78419; Evidence={ECO:0000250|UniProtKB:P83006};PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:41397; Evidence={ECO:0000250|UniProtKB:P83006}; CATALYTIC ACTIVITY: Reaction=1-O-hexadecyl-2-acetyl-sn-glycero-3-phosphocholine + sphing-4-enine = 1-O-hexadecyl-sn-glycero-3-phosphocholine + H(+) + N-(acetyl)-sphing-4-enine; Xref=Rhea:RHEA:41408, ChEBI:CHEBI:15378, ChEBI:CHEBI:44811, ChEBI:CHEBI:46979, ChEBI:CHEBI:57756, ChEBI:CHEBI:64496; Evidence={ECO:0000250|UniProtKB:P83006};PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:41409; Evidence={ECO:0000250|UniProtKB:P83006}; CATALYTIC ACTIVITY: Reaction=1-organyl-2-lyso-sn-glycero-3-phospholipid + a 1-O-alkyl-2-acetyl-sn-glycero-3-phosphocholine = 1-O-alkyl-sn-glycero-3-phosphocholine + 1-organyl-2-acetyl-sn-glycero-3-phospholipid; Xref=Rhea:RHEA:11048, ChEBI:CHEBI:685, ChEBI:CHEBI:30909, ChEBI:CHEBI:36707, ChEBI:CHEBI:76590; EC=2.3.1.149; Evidence={ECO:0000250|UniProtKB:P83006};PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:11049; Evidence={ECO:0000250|UniProtKB:P83006}; CATALYTIC ACTIVITY: Reaction=1-O-hexadecyl-2-glutaryl-sn-glycero-3-phosphocholine + H2O = 1-O-hexadecyl-sn-glycero-3-phosphocholine + glutarate + H(+); Xref=Rhea:RHEA:41700, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30921, ChEBI:CHEBI:64496, ChEBI:CHEBI:78371; Evidence={ECO:0000250|UniProtKB:P79106};PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:41701; Evidence={ECO:0000250|UniProtKB:P79106}; CATALYTIC ACTIVITY: Reaction=1-O-hexadecyl-2-succinyl-sn-glycero-3-phosphocholine + H2O = 1-O-hexadecyl-sn-glycero-3-phosphocholine + H(+) + succinate; Xref=Rhea:RHEA:41696, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30031, ChEBI:CHEBI:64496, ChEBI:CHEBI:78369; Evidence={ECO:0000250|UniProtKB:P79106};PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:41697; Evidence={ECO:0000250|UniProtKB:P79106}; CATALYTIC ACTIVITY: Reaction=1-O-hexadecyl-2-butanoyl-sn-glycero-3-phosphocholine + H2O = 1-O-hexadecyl-sn-glycero-3-phosphocholine + butanoate + H(+); Xref=Rhea:RHEA:41692, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:17968, ChEBI:CHEBI:64496, ChEBI:CHEBI:78368; Evidence={ECO:0000250|UniProtKB:P79106};PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:41693; Evidence={ECO:0000250|UniProtKB:P79106}; CATALYTIC ACTIVITY: Reaction=1-O-hexadecyl-2-propanoyl-sn-glycero-3-phosphocholine + H2O = 1-O-hexadecyl-sn-glycero-3-phosphocholine + H(+) + propanoate; Xref=Rhea:RHEA:41688, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:17272, ChEBI:CHEBI:64496, ChEBI:CHEBI:78367; Evidence={ECO:0000250|UniProtKB:P79106};PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:41689; Evidence={ECO:0000250|UniProtKB:P79106};
DNA Binding
EC Number 3.1.1.47; 2.3.1.149
Enzyme Function FUNCTION: Catalyzes the hydrolyze of the acetyl group at the sn-2 position of platelet-activating factor (PAF) and its analogs, leading to their inactivation (PubMed:9494101). Hydrolyzes propionyl and butyroyl moieties approximately half as effectively as PAF (By similarity). Also catalyzes transacetylation of the acetyl group from platelet-activating factor (PAF) to lysoplasmalogen and to sphingosine, producing plasmalogen analogs of PAF and N-acetylsphingosine (C2-ceramide) respectively. Has a marked selectivity for phospholipids with short acyl chains at the sn-2 position (By similarity). {ECO:0000250|UniProtKB:P79106, ECO:0000250|UniProtKB:P83006, ECO:0000269|PubMed:9494101}.
Temperature Dependency
PH Dependency
Pathway
nucleotide Binding
Features Active site (3); Chain (1); Initiator methionine (1); Lipidation (1); Sequence conflict (1)
Keywords Cytoplasm;Endoplasmic reticulum;Hydrolase;Lipid degradation;Lipid metabolism;Lipoprotein;Membrane;Myristate;Reference proteome;Transferase
Interact With
Induction
Subcellular Location SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:9494101}. Membrane {ECO:0000250|UniProtKB:P79106}; Lipid-anchor {ECO:0000250|UniProtKB:P79106}. Endoplasmic reticulum membrane {ECO:0000250|UniProtKB:P79106}; Lipid-anchor {ECO:0000250|UniProtKB:P79106}. Note=In resting cells, localizes to intracellular membranes and cytoplasm. Translocates from the cytoplasm to intracellular membranes upon oxidative stress. {ECO:0000250|UniProtKB:P79106}.
Modified Residue
Post Translational Modification
Signal Peptide
Structure 3D
Cross Reference PDB -
Mapped Pubmed ID 11294621; 12406338; 16650870; 17157859; 17272759; 21882811; 25707358; 26791393;
Motif
Gene Encoded By
Mass 44,036
Kinetics BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=42 uM for 2-O-acetyl-1-O-hexadecyl-sn-glycero-3-phosphocholine (PAF) {ECO:0000269|PubMed:9494101}; KM=10 uM for 1-decanoyl-2-(4-nitrophenylglutaryl) phosphate (DNGP) {ECO:0000269|PubMed:9494101}; Vmax=35 umol/min/mg enzyme with 2-O-acetyl-1-O-hexadecyl-sn-glycero-3-phosphocholine (PAF) as substrate {ECO:0000269|PubMed:9494101}; Vmax=1.7 umol/min/mg enzyme with 1-decanoyl-2-(4-nitrophenylglutaryl) phosphate (DNGP) as substrate {ECO:0000269|PubMed:9494101};
Metal Binding
Rhea ID RHEA:17777; RHEA:17778; RHEA:40479; RHEA:40480; RHEA:41396; RHEA:41397; RHEA:41408; RHEA:41409; RHEA:11048; RHEA:11049; RHEA:41700; RHEA:41701; RHEA:41696; RHEA:41697; RHEA:41692; RHEA:41693; RHEA:41688; RHEA:41689
Cross Reference Brenda 3.1.1.47;