Detailed Information for C01338

Basic information about inhibitors

IPAD-DB ID C01338
Name Hypericin
Category Natural compounds
2D Structure
3D Structure
Molecular Formula C 3 0 H 1 6 O 8
Molecular Weight 504.4g/mol
IUPAC Name 9, 11, 13, 16, 18, 20-hexahydroxy-5, 24-dimethyloctacyclo[13.11.1.12, 10.03, 8.04, 25.019, 27.021, 26.014, 28]octacosa-1(26), 2, 4(25), 5, 8, 10, 12, 14(28), 15(27), 16, 18, 20, 23-tridecaene-7, 22-dione
InChI InChI=1S/C30H16O8/c1-7-3-9(31)19-23-15(7)16-8(2)4-10(32)20-24(16)28-26-18(12(34)6-14(36)22(26)30(20)38)17-11(33)5-13(35)21(29(19)37)25(17)27(23)28/h3-6, 33-38H, 1-2H3
InChIKey YDOIFHVUBCIUHF-UHFFFAOYSA-N
Canonical SMILES CC1=CC(=O)C2=C(C3=C(C=C(C4=C3C5=C2C1=C6C(=CC(=O)C7=C(C8=C(C=C(C4=C8C5=C67)O)O)O)C)O)O)O
PubChem CID 3663
DrugBank Accession Number -
CAS Registry Number 548-04-9, 1372719-41-9

Biological activity data

Ki -
EC50 -
IC50 0.9 μM(Aβ ), 26.8 μM(Tau filaments)
Inhibition -
Toxicity -
ROS(reactive oxygen species) -
Metal Chelating -
BBB(blood-brain barrier) -
Target Protein Tau filament 
Effects -
Research Models In vitro, Escherichia coli BL21(DE3)
Main Source -
Ref. Link

Physicochemical properties

Molecular Weight(Computed by SwissADME) 504.44
Hac(Computed by SwissADME) 38
Volume(Computed by ADMETlab 2.0) 489.759
Density(Computed by ADMETlab 2.0) 1.029
nRing(Computed by ADMETlab 2.0) 8
MaxRing(Computed by ADMETlab 2.0) 22
nHet(Computed by ADMETlab 2.0) 8
fChar(Computed by ADMETlab 2.0) 0
nRig(Computed by ADMETlab 2.0) 37
Flexibility(Computed by ADMETlab 2.0) 0
Stero Centers(Computed by ADMETlab 2.0) 0
LogS(Computed by ADMETlab 2.0) -9.152
LogD(Computed by ADMETlab 2.0) 2.346

ADMET properties

logP(Computed by ADMETlab 2.0) 5.08
TPSA(Computed by SwissADME) 155.52 Ų
Hbond Acceptor(Computed by SwissADME) 8
Hbond Donor(Computed by SwissADME) 6
Rotatable Bonds(Computed by SwissADME) 0

Pharmacokinetics

GI Absorption(Computed by SwissADME) Low
BBB(blood-brain barrier) Permeant(Computed by SwissADME) No
P-gp Substrate(Computed by SwissADME) No
CYP1A2 Inhibitor(Computed by SwissADME) No
CYP2C19 Inhibitor(Computed by SwissADME) Yes
CYP2C9 Inhibitor(Computed by SwissADME) Yes
CYP2D6 Inhibitor(Computed by SwissADME) No
CYP3A4 Inhibitor(Computed by SwissADME) No
log Kp(Skin Permeation)(Computed by SwissADME) -5.32 cm/s

Druglikeness

Lipinski(Computed by SwissADME) No, 2 violations: MW>500, NHorOH>5
Ghose(Computed by SwissADME) No, 3 violations: MW>480, WLOGP>5.6, MR>130
Veber(Computed by SwissADME) No, 1 violation: TPSA>140
Egan(Computed by SwissADME) No, 1 violation: TPSA>131.6
Muegge(Computed by SwissADME) No, 4 violations: XLOGP3>5, TPSA>150, #rings>7, H-don>5
Bioavailability Score(Computed by SwissADME) 0.17